J3_7P48_005

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0814

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

7P48|1|A|C|743
7P48|1|A|A|744
7P48|1|A|G|745
*
7P48|1|A|C|777
7P48|1|A|G|778
7P48|1|A|A|779
7P48|1|A|A|780
7P48|1|A|C|781
*
7P48|1|A|G|805
7P48|1|A|A|806
7P48|1|A|U|807
7P48|1|A|G|808

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2