J3_7P48_006

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1078

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7P48|1|A|C|1335
7P48|1|A|G|1336
7P48|1|A|A|1337
7P48|1|A|U|1338
7P48|1|A|U|1339
7P48|1|A|G|1340
*
7P48|1|A|C|1669
7P48|1|A|A|1670
7P48|1|A|A|1671
*
7P48|1|A|U|1683
7P48|1|A|A|1684
7P48|1|A|A|1685
7P48|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains