J3_7P7Q_034
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7P7Q|1|A|A|2401, 7P7Q|1|A|U|2403, 7P7Q|1|A|A|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7P7Q_034 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1145
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7P7Q|1|A|G|2295
7P7Q|1|A|C|2296
7P7Q|1|A|C|2297
*
7P7Q|1|A|G|2397
7P7Q|1|A|C|2398
7P7Q|1|A|U|2399
7P7Q|1|A|U|2400
7P7Q|1|A|A|2401
7P7Q|1|A|G|2402
7P7Q|1|A|U|2403
7P7Q|1|A|G|2404
7P7Q|1|A|A|2405
7P7Q|1|A|U|2406
7P7Q|1|A|C|2407
7P7Q|1|A|C|2408
*
7P7Q|1|A|G|2434
7P7Q|1|A|C|2435
7P7Q|1|A|U|2436
7P7Q|1|A|C|2437
7P7Q|1|A|A|2438
7P7Q|1|A|A|2439
7P7Q|1|A|C|2440
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- ARE-ABC-F family resistance factor PoxtA
- Chain 5
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L27
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