J3_7PD3_007

3D structure

PDB id

7PD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGCCCAGUG*CACUUG*CCUGUAUGAAUG

Length

28 nucleotides

Bulged bases

7PD3|1|A|C|2548, 7PD3|1|A|C|2549, 7PD3|1|A|U|2606, 7PD3|1|A|U|2630, 7PD3|1|A|G|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PD3|1|A|C|2544
7PD3|1|A|U|2545
7PD3|1|A|G|2546
7PD3|1|A|C|2547
7PD3|1|A|C|2548
7PD3|1|A|C|2549
7PD3|1|A|A|2550
7PD3|1|A|G|2551
7PD3|1|A|U|2552
7PD3|1|A|G|2553
*
7PD3|1|A|C|2603
7PD3|1|A|A|2604
7PD3|1|A|C|2605
7PD3|1|A|U|2606
7PD3|1|A|U|2607
7PD3|1|A|G|2608
*
7PD3|1|A|C|2624
7PD3|1|A|C|2625
7PD3|1|A|U|2626
7PD3|1|A|G|2627
7PD3|1|A|U|2628
7PD3|1|A|A|2629
7PD3|1|A|U|2630
7PD3|1|A|G|2631
7PD3|1|A|A|2632
7PD3|1|A|A|2633
7PD3|1|A|U|2634
7PD3|1|A|G|2635

Current chains

Chain A

16S rRNA

Nearby chains

Chain y

Transcription termination factor 4, mitochondrial

Chain z

Mitochondrial ribosome-associated GTPase 1