J3_7PJS_003

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7PJS|1|A|U|686, 7PJS|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJS_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0675

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJS|1|A|U|683
7PJS|1|A|G|684
7PJS|1|A|A|685
7PJS|1|A|U|686
7PJS|1|A|C|687
7PJS|1|A|U|688
7PJS|1|A|A|689
*
7PJS|1|A|U|773
7PJS|1|A|G|774
7PJS|1|A|G|775
*
7PJS|1|A|C|791
7PJS|1|A|A|792
7PJS|1|A|A|793
7PJS|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2