J3_7PJS_018

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7PJS|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJS_018 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0541

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJS|1|A|G|297
7PJS|1|A|G|298
7PJS|1|A|A|299
7PJS|1|A|A|300
7PJS|1|A|G|301
*
7PJS|1|A|C|316
7PJS|1|A|G|317
7PJS|1|A|C|318
7PJS|1|A|G|319
7PJS|1|A|A|320
7PJS|1|A|U|321
7PJS|1|A|A|322
7PJS|1|A|C|323
7PJS|1|A|A|324
7PJS|1|A|G|325
*
7PJS|1|A|C|337
7PJS|1|A|G|338
7PJS|1|A|U|339
7PJS|1|A|A|340
7PJS|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24