J3_7PJU_003

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7PJU|1|A|U|321, 7PJU|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJU_003 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0638

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJU|1|A|G|297
7PJU|1|A|G|298
7PJU|1|A|A|299
7PJU|1|A|A|300
7PJU|1|A|G|301
*
7PJU|1|A|C|316
7PJU|1|A|G|317
7PJU|1|A|C|318
7PJU|1|A|G|319
7PJU|1|A|A|320
7PJU|1|A|U|321
7PJU|1|A|A|322
7PJU|1|A|C|323
7PJU|1|A|A|324
7PJU|1|A|G|325
*
7PJU|1|A|C|337
7PJU|1|A|G|338
7PJU|1|A|U|339
7PJU|1|A|A|340
7PJU|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

Ribosomal protein L24