J3_7PJU_035

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7PJU|1|a|U|1212, 7PJU|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJU_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1305

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7PJU|1|a|C|990
7PJU|1|a|U|991
7PJU|1|a|U|992
7PJU|1|a|G|993
7PJU|1|a|A|994
7PJU|1|a|C|995
7PJU|1|a|A|996
7PJU|1|a|U|997
*
7PJU|1|a|A|1044
7PJU|1|a|C|1045
7PJU|1|a|A|1046
7PJU|1|a|G|1047
*
7PJU|1|a|C|1210
7PJU|1|a|U|1211
7PJU|1|a|U|1212
7PJU|1|a|A|1213
7PJU|1|a|C|1214
7PJU|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14