J3_7PJV_003

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7PJV|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJV_003 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0684

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJV|1|A|G|297
7PJV|1|A|G|298
7PJV|1|A|A|299
7PJV|1|A|A|300
7PJV|1|A|G|301
*
7PJV|1|A|C|316
7PJV|1|A|G|317
7PJV|1|A|C|318
7PJV|1|A|G|319
7PJV|1|A|A|320
7PJV|1|A|U|321
7PJV|1|A|A|322
7PJV|1|A|C|323
7PJV|1|A|A|324
7PJV|1|A|G|325
*
7PJV|1|A|C|337
7PJV|1|A|G|338
7PJV|1|A|U|339
7PJV|1|A|A|340
7PJV|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24