J3_7PJV_004

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7PJV|1|A|U|686, 7PJV|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJV_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0783

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJV|1|A|U|683
7PJV|1|A|G|684
7PJV|1|A|A|685
7PJV|1|A|U|686
7PJV|1|A|C|687
7PJV|1|A|U|688
7PJV|1|A|A|689
*
7PJV|1|A|U|773
7PJV|1|A|G|774
7PJV|1|A|G|775
*
7PJV|1|A|C|791
7PJV|1|A|A|792
7PJV|1|A|A|793
7PJV|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2