J3_7PJW_003

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7PJW|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJW_003 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0934

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJW|1|A|G|297
7PJW|1|A|G|298
7PJW|1|A|A|299
7PJW|1|A|A|300
7PJW|1|A|G|301
*
7PJW|1|A|C|316
7PJW|1|A|G|317
7PJW|1|A|C|318
7PJW|1|A|G|319
7PJW|1|A|A|320
7PJW|1|A|U|321
7PJW|1|A|A|322
7PJW|1|A|C|323
7PJW|1|A|A|324
7PJW|1|A|G|325
*
7PJW|1|A|C|337
7PJW|1|A|G|338
7PJW|1|A|U|339
7PJW|1|A|A|340
7PJW|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24