J3_7PJW_032

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CU(2MG)C*GCGGCCG(PSU)AAC(3TD)A(PSU)AACGGUCCUAAGGUAG*CGAAUG

Length

40 nucleotides

Bulged bases

7PJW|1|A|A|1913, 7PJW|1|A|U|1926, 7PJW|1|A|U|1971

QA status

Modified nucleotides: 2MG, PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PJW|1|A|C|1833
7PJW|1|A|U|1834
7PJW|1|A|2MG|1835
7PJW|1|A|C|1836
*
7PJW|1|A|G|1904
7PJW|1|A|C|1905
7PJW|1|A|G|1906
7PJW|1|A|G|1907
7PJW|1|A|C|1908
7PJW|1|A|C|1909
7PJW|1|A|G|1910
7PJW|1|A|PSU|1911
7PJW|1|A|A|1912
7PJW|1|A|A|1913
7PJW|1|A|C|1914
7PJW|1|A|3TD|1915
7PJW|1|A|A|1916
7PJW|1|A|PSU|1917
7PJW|1|A|A|1918
7PJW|1|A|A|1919
7PJW|1|A|C|1920
7PJW|1|A|G|1921
7PJW|1|A|G|1922
7PJW|1|A|U|1923
7PJW|1|A|C|1924
7PJW|1|A|C|1925
7PJW|1|A|U|1926
7PJW|1|A|A|1927
7PJW|1|A|A|1928
7PJW|1|A|G|1929
7PJW|1|A|G|1930
7PJW|1|A|U|1931
7PJW|1|A|A|1932
7PJW|1|A|G|1933
*
7PJW|1|A|C|1967
7PJW|1|A|G|1968
7PJW|1|A|A|1969
7PJW|1|A|A|1970
7PJW|1|A|U|1971
7PJW|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain v

Transfer RNA; tRNA

Chain w

Transfer RNA; tRNA