J3_7PJX_004

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7PJX|1|A|U|686, 7PJX|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJX_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0783

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJX|1|A|U|683
7PJX|1|A|G|684
7PJX|1|A|A|685
7PJX|1|A|U|686
7PJX|1|A|C|687
7PJX|1|A|U|688
7PJX|1|A|A|689
*
7PJX|1|A|U|773
7PJX|1|A|G|774
7PJX|1|A|G|775
*
7PJX|1|A|C|791
7PJX|1|A|A|792
7PJX|1|A|A|793
7PJX|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2