3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
7PJY|1|A|A|2388, 7PJY|1|A|U|2390, 7PJY|1|A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7PJY_030 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0857
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7PJY|1|A|G|2282
7PJY|1|A|C|2283
7PJY|1|A|A|2284
*
7PJY|1|A|U|2384
7PJY|1|A|C|2385
7PJY|1|A|A|2386
7PJY|1|A|U|2387
7PJY|1|A|A|2388
7PJY|1|A|G|2389
7PJY|1|A|U|2390
7PJY|1|A|G|2391
7PJY|1|A|A|2392
7PJY|1|A|U|2393
7PJY|1|A|C|2394
7PJY|1|A|C|2395
*
7PJY|1|A|G|2421
7PJY|1|A|C|2422
7PJY|1|A|U|2423
7PJY|1|A|C|2424
7PJY|1|A|A|2425
7PJY|1|A|A|2426
7PJY|1|A|C|2427

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain v
Transfer RNA; tRNA

Coloring options:


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