J3_7PKQ_005
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGGUUUAUAC*GUUGAAUUU*AGAUG
- Length
- 24 nucleotides
- Bulged bases
- 7PKQ|1|1|U|47, 7PKQ|1|1|U|48, 7PKQ|1|1|U|49, 7PKQ|1|1|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PKQ|1|1|U|44
7PKQ|1|1|G|45
7PKQ|1|1|G|46
7PKQ|1|1|U|47
7PKQ|1|1|U|48
7PKQ|1|1|U|49
7PKQ|1|1|A|50
7PKQ|1|1|U|51
7PKQ|1|1|A|52
7PKQ|1|1|C|53
*
7PKQ|1|2|G|167
7PKQ|1|2|U|168
7PKQ|1|2|U|169
7PKQ|1|2|G|170
7PKQ|1|2|A|171
7PKQ|1|2|A|172
7PKQ|1|2|U|173
7PKQ|1|2|U|174
7PKQ|1|2|U|175
*
7PKQ|1|2|A|202
7PKQ|1|2|G|203
7PKQ|1|2|A|204
7PKQ|1|2|U|205
7PKQ|1|2|G|206
Current chains
- Chain 1
- S1 rRNA
- Chain 2
- S2 rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- uS12m
Coloring options: