J3_7PO4_001

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUAG*CAAUAGAUAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

7PO4|1|A|U|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PO4|1|A|C|1678
7PO4|1|A|U|1679
7PO4|1|A|A|1680
7PO4|1|A|G|1681
*
7PO4|1|A|C|1771
7PO4|1|A|A|1772
7PO4|1|A|A|1773
7PO4|1|A|U|1774
7PO4|1|A|A|1775
7PO4|1|A|G|1776
7PO4|1|A|A|1777
7PO4|1|A|U|1778
7PO4|1|A|A|1779
7PO4|1|A|U|1780
7PO4|1|A|A|1781
7PO4|1|A|G|1782
7PO4|1|A|U|1783
7PO4|1|A|A|1784
7PO4|1|A|C|1785
*
7PO4|1|A|G|1792
7PO4|1|A|G|1793
7PO4|1|A|A|1794
7PO4|1|A|A|1795
7PO4|1|A|A|1796
7PO4|1|A|G|1797

Current chains

Chain A

16SrRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial

Chain R

39S ribosomal protein L20, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain V

39S ribosomal protein L24, mitochondrial

Chain Y

39S ribosomal protein L47, mitochondrial

Chain c

39S ribosomal protein L44, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial