J3_7PWG_013

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCAUCC*GGC*GUG

Length

12 nucleotides

Bulged bases

7PWG|1|3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PWG|1|3|C|9
7PWG|1|3|C|10
7PWG|1|3|A|11
7PWG|1|3|U|12
7PWG|1|3|C|13
7PWG|1|3|C|14
*
7PWG|1|3|G|66
7PWG|1|3|G|67
7PWG|1|3|C|68
*
7PWG|1|3|G|109
7PWG|1|3|U|110
7PWG|1|3|G|111

Current chains

Chain 3

rRNA 5S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain D

Ribosomal protein L5

Chain I

Ribosomal protein L10

Chain J

Ribosomal protein L11

Chain T

Ribosomal protein L21