J3_7PWG_016
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGAUAGCGGACCAAGUAG*CGAACG*CUCG
- Length
- 28 nucleotides
- Bulged bases
- 7PWG|1|1|U|293, 7PWG|1|1|C|301, 7PWG|1|1|A|302, 7PWG|1|4|C|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWG_016 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1703
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7PWG|1|1|C|290
7PWG|1|1|G|291
7PWG|1|1|A|292
7PWG|1|1|U|293
7PWG|1|1|A|294
7PWG|1|1|G|295
7PWG|1|1|C|296
7PWG|1|1|G|297
7PWG|1|1|G|298
7PWG|1|1|A|299
7PWG|1|1|C|300
7PWG|1|1|C|301
7PWG|1|1|A|302
7PWG|1|1|A|303
7PWG|1|1|G|304
7PWG|1|1|U|305
7PWG|1|1|A|306
7PWG|1|1|G|307
*
7PWG|1|1|C|314
7PWG|1|1|G|315
7PWG|1|1|A|316
7PWG|1|1|A|317
7PWG|1|1|C|318
7PWG|1|1|G|319
*
7PWG|1|4|C|22
7PWG|1|4|U|23
7PWG|1|4|C|24
7PWG|1|4|G|25
Current chains
- Chain 1
- rRNA 28S
- Chain 4
- rRNA 5.8S
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- Ribosomal protein L39
Coloring options: