J3_7PWG_019
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- (OMG)UC*GCCUACCGAUCC*GGUGGC
- Length
- 21 nucleotides
- Bulged bases
- 7PWG|1|1|C|2183, 7PWG|1|1|G|2219
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWG_019 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.125
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7PWG|1|1|OMG|2074
7PWG|1|1|U|2075
7PWG|1|1|C|2076
*
7PWG|1|1|G|2177
7PWG|1|1|C|2178
7PWG|1|1|C|2179
7PWG|1|1|U|2180
7PWG|1|1|A|2181
7PWG|1|1|C|2182
7PWG|1|1|C|2183
7PWG|1|1|G|2184
7PWG|1|1|A|2185
7PWG|1|1|U|2186
7PWG|1|1|C|2187
7PWG|1|1|C|2188
*
7PWG|1|1|G|2215
7PWG|1|1|G|2216
7PWG|1|1|U|2217
7PWG|1|1|G|2218
7PWG|1|1|G|2219
7PWG|1|1|C|2220
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain Q
- Ribosomal protein L18
- Chain T
- Ribosomal protein L21
- Chain a
- Ribosomal protein L27a
- Chain o
- Ribosomal protein L44
- Chain w
- Transfer RNA; tRNA
Coloring options: