J3_7PZY_027
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 7PZY|1|A|G|1184, 7PZY|1|A|G|1186
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PZY_027 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0496
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7PZY|1|A|C|1165
7PZY|1|A|U|1166
7PZY|1|A|U|1167
7PZY|1|A|A|1168
7PZY|1|A|A|1169
7PZY|1|A|U|1170
7PZY|1|A|U|1171
7PZY|1|A|U|1172
*
7PZY|1|A|G|1183
7PZY|1|A|G|1184
7PZY|1|A|G|1185
7PZY|1|A|G|1186
7PZY|1|A|A|1187
7PZY|1|A|A|1188
7PZY|1|A|A|1189
7PZY|1|A|C|1190
7PZY|1|A|U|1191
7PZY|1|A|C|1192
7PZY|1|A|A|1193
7PZY|1|A|C|1194
*
7PZY|1|A|G|1440
7PZY|1|A|G|1441
7PZY|1|A|C|1442
7PZY|1|A|C|1443
7PZY|1|A|G|1444
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Q
- Ribosomal 40S subunit protein S15
- Chain T
- Ribosomal 40S subunit protein S18B
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
- Chain i
- HABP4_PAI-RBP1 domain-containing protein
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