J3_7PZY_040

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA

Length

36 nucleotides

Bulged bases

7PZY|1|1|A|3142, 7PZY|1|1|G|3143, 7PZY|1|1|A|3180, 7PZY|1|1|G|3181, 7PZY|1|1|G|3184, 7PZY|1|1|A|3233, 7PZY|1|1|A|3235, 7PZY|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PZY|1|1|U|3138
7PZY|1|1|U|3139
7PZY|1|1|U|3140
7PZY|1|1|U|3141
7PZY|1|1|A|3142
7PZY|1|1|G|3143
7PZY|1|1|A|3144
7PZY|1|1|U|3145
7PZY|1|1|G|3146
*
7PZY|1|1|C|3177
7PZY|1|1|A|3178
7PZY|1|1|U|3179
7PZY|1|1|A|3180
7PZY|1|1|G|3181
7PZY|1|1|C|3182
7PZY|1|1|A|3183
7PZY|1|1|G|3184
7PZY|1|1|G|3185
*
7PZY|1|1|C|3230
7PZY|1|1|G|3231
7PZY|1|1|G|3232
7PZY|1|1|A|3233
7PZY|1|1|U|3234
7PZY|1|1|A|3235
7PZY|1|1|G|3236
7PZY|1|1|C|3237
7PZY|1|1|A|3238
7PZY|1|1|A|3239
7PZY|1|1|U|3240
7PZY|1|1|G|3241
7PZY|1|1|U|3242
7PZY|1|1|C|3243
7PZY|1|1|A|3244
7PZY|1|1|A|3245
7PZY|1|1|C|3246
7PZY|1|1|A|3247

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AG

Ribosomal 60S subunit protein L33A

Chain n

60S ribosomal protein L6

Chain u

Ribosomal 60S subunit protein L14B

Chain w

Ribosomal 60S subunit protein L16A

Chain x

Ribosomal 60S subunit protein L17B