J3_7Q0R_027

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

7Q0R|1|A|G|1184, 7Q0R|1|A|G|1186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q0R_027 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.0496

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7Q0R|1|A|C|1165
7Q0R|1|A|U|1166
7Q0R|1|A|U|1167
7Q0R|1|A|A|1168
7Q0R|1|A|A|1169
7Q0R|1|A|U|1170
7Q0R|1|A|U|1171
7Q0R|1|A|U|1172
*
7Q0R|1|A|G|1183
7Q0R|1|A|G|1184
7Q0R|1|A|G|1185
7Q0R|1|A|G|1186
7Q0R|1|A|A|1187
7Q0R|1|A|A|1188
7Q0R|1|A|A|1189
7Q0R|1|A|C|1190
7Q0R|1|A|U|1191
7Q0R|1|A|C|1192
7Q0R|1|A|A|1193
7Q0R|1|A|C|1194
*
7Q0R|1|A|G|1440
7Q0R|1|A|G|1441
7Q0R|1|A|C|1442
7Q0R|1|A|C|1443
7Q0R|1|A|G|1444

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal 40S subunit protein S15

Chain T

Ribosomal 40S subunit protein S18B

Chain V

Ribosomal 40S subunit protein S20

Chain e

Ribosomal 40S subunit protein S29A

Chain g

Ubiquitin-ribosomal 40S subunit protein S31 fusion protein

Chain i

HABP4_PAI-RBP1 domain-containing protein