J3_7Q0R_040

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA

Length

36 nucleotides

Bulged bases

7Q0R|1|1|A|3142, 7Q0R|1|1|G|3143, 7Q0R|1|1|A|3180, 7Q0R|1|1|G|3181, 7Q0R|1|1|G|3184, 7Q0R|1|1|A|3233, 7Q0R|1|1|A|3235, 7Q0R|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Q0R|1|1|U|3138
7Q0R|1|1|U|3139
7Q0R|1|1|U|3140
7Q0R|1|1|U|3141
7Q0R|1|1|A|3142
7Q0R|1|1|G|3143
7Q0R|1|1|A|3144
7Q0R|1|1|U|3145
7Q0R|1|1|G|3146
*
7Q0R|1|1|C|3177
7Q0R|1|1|A|3178
7Q0R|1|1|U|3179
7Q0R|1|1|A|3180
7Q0R|1|1|G|3181
7Q0R|1|1|C|3182
7Q0R|1|1|A|3183
7Q0R|1|1|G|3184
7Q0R|1|1|G|3185
*
7Q0R|1|1|C|3230
7Q0R|1|1|G|3231
7Q0R|1|1|G|3232
7Q0R|1|1|A|3233
7Q0R|1|1|U|3234
7Q0R|1|1|A|3235
7Q0R|1|1|G|3236
7Q0R|1|1|C|3237
7Q0R|1|1|A|3238
7Q0R|1|1|A|3239
7Q0R|1|1|U|3240
7Q0R|1|1|G|3241
7Q0R|1|1|U|3242
7Q0R|1|1|C|3243
7Q0R|1|1|A|3244
7Q0R|1|1|A|3245
7Q0R|1|1|C|3246
7Q0R|1|1|A|3247

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AG

Ribosomal 60S subunit protein L33A

Chain n

60S ribosomal protein L6

Chain u

Ribosomal 60S subunit protein L14B

Chain w

Ribosomal 60S subunit protein L16A

Chain x

Ribosomal 60S subunit protein L17B