J3_7Q4K_001

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0842

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7Q4K|1|AA|G|46
7Q4K|1|AA|C|47
*
7Q4K|1|AA|G|361
7Q4K|1|AA|G|362
7Q4K|1|AA|A|363
7Q4K|1|AA|A|364
7Q4K|1|AA|U|365
7Q4K|1|AA|A|366
7Q4K|1|AA|U|367
*
7Q4K|1|AA|A|393
7Q4K|1|AA|G|394
7Q4K|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16