J3_7Q4K_016

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_016 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0623

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7Q4K|1|BA|C|698
7Q4K|1|BA|A|699
7Q4K|1|BA|G|700
*
7Q4K|1|BA|C|732
7Q4K|1|BA|G|733
7Q4K|1|BA|A|734
7Q4K|1|BA|A|735
7Q4K|1|BA|C|736
*
7Q4K|1|BA|G|760
7Q4K|1|BA|A|761
7Q4K|1|BA|U|762
7Q4K|1|BA|G|763

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2