J3_7Q4K_020

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_020 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1107

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7Q4K|1|BA|U|1344
7Q4K|1|BA|C|1345
7Q4K|1|BA|G|1346
7Q4K|1|BA|A|1347
7Q4K|1|BA|C|1348
7Q4K|1|BA|C|1349
*
7Q4K|1|BA|G|1382
7Q4K|1|BA|A|1383
7Q4K|1|BA|A|1384
7Q4K|1|BA|A|1385
*
7Q4K|1|BA|U|1402
7Q4K|1|BA|A|1403

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L23