J3_7QGN_017

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGN_017 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0631

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7QGN|1|N|C|698
7QGN|1|N|A|699
7QGN|1|N|G|700
*
7QGN|1|N|C|732
7QGN|1|N|G|733
7QGN|1|N|A|734
7QGN|1|N|A|735
7QGN|1|N|C|736
*
7QGN|1|N|G|760
7QGN|1|N|A|761
7QGN|1|N|U|762
7QGN|1|N|G|763

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2