J3_7QQ3_007

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7QQ3|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QQ3_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1663

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7QQ3|1|I|C|1306
7QQ3|1|I|A|1307
7QQ3|1|I|A|1308
7QQ3|1|I|G|1309
*
7QQ3|1|I|C|1605
7QQ3|1|I|C|1606
7QQ3|1|I|C|1607
7QQ3|1|I|A|1608
7QQ3|1|I|A|1609
7QQ3|1|I|A|1610
7QQ3|1|I|C|1611
*
7QQ3|1|I|G|1620
7QQ3|1|I|U|1621
7QQ3|1|I|G|1622

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L34