J3_7QQ3_010
3D structure
- PDB id
- 7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 7QQ3|1|I|U|2334, 7QQ3|1|I|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QQ3_010 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.0911
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7QQ3|1|I|C|2295
7QQ3|1|I|U|2296
7QQ3|1|I|A|2297
7QQ3|1|I|A|2298
7QQ3|1|I|U|2299
*
7QQ3|1|I|A|2317
7QQ3|1|I|G|2318
7QQ3|1|I|G|2319
7QQ3|1|I|U|2320
7QQ3|1|I|U|2321
7QQ3|1|I|A|2322
7QQ3|1|I|G|2323
*
7QQ3|1|I|C|2332
7QQ3|1|I|A|2333
7QQ3|1|I|U|2334
7QQ3|1|I|A|2335
7QQ3|1|I|A|2336
7QQ3|1|I|G|2337
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain J
- 5S ribosomal RNA; 5S rRNA
- Chain W
- 50S ribosomal protein L18
- Chain e
- 50S ribosomal protein L27
Coloring options: