J3_7QQ3_017

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7QQ3|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QQ3_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0482

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7QQ3|1|I|G|297
7QQ3|1|I|G|298
7QQ3|1|I|A|299
7QQ3|1|I|A|300
7QQ3|1|I|G|301
*
7QQ3|1|I|C|316
7QQ3|1|I|G|317
7QQ3|1|I|C|318
7QQ3|1|I|G|319
7QQ3|1|I|A|320
7QQ3|1|I|U|321
7QQ3|1|I|A|322
7QQ3|1|I|C|323
7QQ3|1|I|A|324
7QQ3|1|I|G|325
*
7QQ3|1|I|C|337
7QQ3|1|I|G|338
7QQ3|1|I|U|339
7QQ3|1|I|A|340
7QQ3|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24