J3_7R4X_003

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

A(PSU)CUUGGGAGCGGGCGUCCCCGCCU*AUGGAAUAGG*CAUGAU

Length

41 nucleotides

Bulged bases

7R4X|1|2|C|687, 7R4X|1|2|G|697, 7R4X|1|2|C|730, 7R4X|1|2|U|732, 7R4X|1|2|C|735, 7R4X|1|2|U|871, 7R4X|1|2|G|873, 7R4X|1|2|A|913

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7R4X|1|2|A|685
7R4X|1|2|PSU|686
7R4X|1|2|C|687
7R4X|1|2|U|688
7R4X|1|2|U|689
7R4X|1|2|G|690
7R4X|1|2|G|691
7R4X|1|2|G|692
7R4X|1|2|A|693
7R4X|1|2|G|694
7R4X|1|2|C|695
7R4X|1|2|G|696
7R4X|1|2|G|697
7R4X|1|2|G|698
7R4X|1|2|C|730
7R4X|1|2|G|731
7R4X|1|2|U|732
7R4X|1|2|C|733
7R4X|1|2|C|734
7R4X|1|2|C|735
7R4X|1|2|C|736
7R4X|1|2|G|737
7R4X|1|2|C|738
7R4X|1|2|C|739
7R4X|1|2|U|800
*
7R4X|1|2|A|865
7R4X|1|2|U|866
7R4X|1|2|G|867
7R4X|1|2|G|868
7R4X|1|2|A|869
7R4X|1|2|A|870
7R4X|1|2|U|871
7R4X|1|2|A|872
7R4X|1|2|G|873
7R4X|1|2|G|874
*
7R4X|1|2|C|912
7R4X|1|2|A|913
7R4X|1|2|U|914
7R4X|1|2|G|915
7R4X|1|2|A|916
7R4X|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

40S ribosomal protein S11

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain X

40S ribosomal protein S23