J3_7R4X_006

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUGG*C(PSU)UCCG*CAAAG

Length

15 nucleotides

Bulged bases

7R4X|1|2|C|1138, 7R4X|1|2|A|1150

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7R4X|1|2|C|1094
7R4X|1|2|U|1095
7R4X|1|2|G|1096
7R4X|1|2|G|1097
*
7R4X|1|2|C|1135
7R4X|1|2|PSU|1136
7R4X|1|2|U|1137
7R4X|1|2|C|1138
7R4X|1|2|C|1139
7R4X|1|2|G|1140
*
7R4X|1|2|C|1147
7R4X|1|2|A|1148
7R4X|1|2|A|1149
7R4X|1|2|A|1150
7R4X|1|2|G|1151

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain V

40S ribosomal protein S21

Chain W

40S ribosomal protein S15a

Chain a

40S ribosomal protein S26

Chain b

40S ribosomal protein S27