J3_7R7A_017

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU

Length

36 nucleotides

Bulged bases

7R7A|1|1|A|3172, 7R7A|1|1|G|3173, 7R7A|1|1|A|3215, 7R7A|1|1|G|3216, 7R7A|1|1|C|3217, 7R7A|1|1|G|3219, 7R7A|1|1|A|3268, 7R7A|1|1|U|3270, 7R7A|1|1|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7R7A|1|1|A|3168
7R7A|1|1|U|3169
7R7A|1|1|A|3170
7R7A|1|1|U|3171
7R7A|1|1|A|3172
7R7A|1|1|G|3173
7R7A|1|1|A|3174
7R7A|1|1|U|3175
7R7A|1|1|G|3176
*
7R7A|1|1|C|3212
7R7A|1|1|A|3213
7R7A|1|1|U|3214
7R7A|1|1|A|3215
7R7A|1|1|G|3216
7R7A|1|1|C|3217
7R7A|1|1|A|3218
7R7A|1|1|G|3219
7R7A|1|1|G|3220
*
7R7A|1|1|C|3265
7R7A|1|1|G|3266
7R7A|1|1|A|3267
7R7A|1|1|A|3268
7R7A|1|1|U|3269
7R7A|1|1|U|3270
7R7A|1|1|G|3271
7R7A|1|1|C|3272
7R7A|1|1|A|3273
7R7A|1|1|A|3274
7R7A|1|1|U|3275
7R7A|1|1|G|3276
7R7A|1|1|U|3277
7R7A|1|1|C|3278
7R7A|1|1|A|3279
7R7A|1|1|U|3280
7R7A|1|1|U|3281
7R7A|1|1|U|3282

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A

Chain P

60S ribosomal protein L17-A

Chain f

60S ribosomal protein L33-A