J3_7RQ8_035

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

7RQ8|1|2A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_035 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0408

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7RQ8|1|2A|C|1306
7RQ8|1|2A|A|1307
7RQ8|1|2A|A|1308
7RQ8|1|2A|G|1309
*
7RQ8|1|2A|C|1605
7RQ8|1|2A|G|1606
7RQ8|1|2A|C|1607
7RQ8|1|2A|A|1608
7RQ8|1|2A|A|1609
7RQ8|1|2A|A|1610
7RQ8|1|2A|C|1611
*
7RQ8|1|2A|G|1620
7RQ8|1|2A|U|1621
7RQ8|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34