J3_7RQ8_046

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_046 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1062

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7RQ8|1|2a|C|936
7RQ8|1|2a|A|937
7RQ8|1|2a|A|938
7RQ8|1|2a|G|939
*
7RQ8|1|2a|C|1344
7RQ8|1|2a|U|1345
7RQ8|1|2a|A|1346
7RQ8|1|2a|G|1347
7RQ8|1|2a|U|1348
7RQ8|1|2a|A|1349
7RQ8|1|2a|A|1350
*
7RQ8|1|2a|U|1372
7RQ8|1|2a|G|1373
7RQ8|1|2a|A|1374
7RQ8|1|2a|A|1375
7RQ8|1|2a|U|1376
7RQ8|1|2a|A|1377
7RQ8|1|2a|C|1378
7RQ8|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA