J3_7RQ9_003
3D structure
- PDB id
- 7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 7RQ9|1|1A|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7RQ9_003 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.0658
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7RQ9|1|1A|U|269
7RQ9|1|1A|A|270
7RQ9|1|1A|A|271
7RQ9|1|1A|A|271|||A
7RQ9|1|1A|C|271|||B
*
7RQ9|1|1A|G|271|||V
7RQ9|1|1A|G|271|||W
7RQ9|1|1A|G|271|||X
7RQ9|1|1A|U|271|||Y
7RQ9|1|1A|C|271|||Z
7RQ9|1|1A|G|272
7RQ9|1|1A|U|272|||A
7RQ9|1|1A|G|272|||B
*
7RQ9|1|1A|C|366
7RQ9|1|1A|G|370
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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