J3_7RQ9_049

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

7RQ9|1|2a|A|975, 7RQ9|1|2a|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ9_049 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0953

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7RQ9|1|2a|U|955
7RQ9|1|2a|U|956
7RQ9|1|2a|U|957
7RQ9|1|2a|A|958
7RQ9|1|2a|A|959
7RQ9|1|2a|U|960
7RQ9|1|2a|U|961
7RQ9|1|2a|C|962
*
7RQ9|1|2a|G|973
7RQ9|1|2a|A|974
7RQ9|1|2a|A|975
7RQ9|1|2a|G|976
7RQ9|1|2a|A|977
7RQ9|1|2a|A|978
7RQ9|1|2a|C|979
7RQ9|1|2a|C|980
7RQ9|1|2a|U|981
7RQ9|1|2a|U|982
7RQ9|1|2a|A|983
7RQ9|1|2a|C|984
*
7RQ9|1|2a|G|1221
7RQ9|1|2a|G|1222
7RQ9|1|2a|C|1223
7RQ9|1|2a|G|1224
7RQ9|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA