J3_7RQA_023

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQA_023 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.1967

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQA|1|1a|G|1002
7RQA|1|1a|G|1003
7RQA|1|1a|A|1004
7RQA|1|1a|A|1005
7RQA|1|1a|C|1006
*
7RQA|1|1a|G|1023
7RQA|1|1a|G|1024
7RQA|1|1a|U|1025
7RQA|1|1a|G|1026
7RQA|1|1a|C|1027
7RQA|1|1a|C|1028
*
7RQA|1|1a|G|1033
7RQA|1|1a|G|1034
7RQA|1|1a|A|1035
7RQA|1|1a|G|1036
7RQA|1|1a|C|1037
7RQA|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains