J3_7RQB_013

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

7RQB|1|1A|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7RQB|1|1A|C|2789
7RQB|1|1A|A|2790
7RQB|1|1A|C|2791
*
7RQB|1|1A|G|2805
7RQB|1|1A|G|2807
7RQB|1|1A|U|2808
7RQB|1|1A|A|2809
7RQB|1|1A|A|2810
7RQB|1|1A|G|2811
*
7RQB|1|1A|C|2889
7RQB|1|1A|G|2891
7RQB|1|1A|A|2892
7RQB|1|1A|G|2893
7RQB|1|1A|G|2894

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22