J3_7RQC_047

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

7RQC|1|2a|A|975, 7RQC|1|2a|G|976, 7RQC|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQC_047 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0827

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7RQC|1|2a|U|955
7RQC|1|2a|U|956
7RQC|1|2a|U|957
7RQC|1|2a|A|958
7RQC|1|2a|A|959
7RQC|1|2a|U|960
7RQC|1|2a|U|961
7RQC|1|2a|C|962
*
7RQC|1|2a|G|973
7RQC|1|2a|A|974
7RQC|1|2a|A|975
7RQC|1|2a|G|976
7RQC|1|2a|A|977
7RQC|1|2a|A|978
7RQC|1|2a|C|979
7RQC|1|2a|C|980
7RQC|1|2a|U|981
7RQC|1|2a|U|982
7RQC|1|2a|A|983
7RQC|1|2a|C|984
*
7RQC|1|2a|G|1221
7RQC|1|2a|G|1222
7RQC|1|2a|C|1223
7RQC|1|2a|G|1224
7RQC|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A