J3_7RQD_041

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCG*CGGUAAG*CGAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2A|C|2788
7RQD|1|2A|C|2789
7RQD|1|2A|G|2792
*
7RQD|1|2A|C|2804
7RQD|1|2A|G|2805
7RQD|1|2A|G|2807
7RQD|1|2A|U|2808
7RQD|1|2A|A|2809
7RQD|1|2A|A|2810
7RQD|1|2A|G|2811
*
7RQD|1|2A|C|2889
7RQD|1|2A|G|2891
7RQD|1|2A|A|2892
7RQD|1|2A|G|2893
7RQD|1|2A|G|2894

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22