J3_7RQD_068

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAGACAGCCAGGA*UUUAAAGAGUG*CUCACUGGUCGAG

Length

39 nucleotides

Bulged bases

7RQD|1|2A|A|1046, 7RQD|1|2A|U|1083, 7RQD|1|2A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2A|C|1043
7RQD|1|2A|G|1044
7RQD|1|2A|A|1045
7RQD|1|2A|A|1046
7RQD|1|2A|G|1047
7RQD|1|2A|A|1048
7RQD|1|2A|C|1049
7RQD|1|2A|A|1050
7RQD|1|2A|G|1051
7RQD|1|2A|C|1052
7RQD|1|2A|C|1053
7RQD|1|2A|A|1054
7RQD|1|2A|G|1055
7RQD|1|2A|G|1056
7RQD|1|2A|A|1057
*
7RQD|1|2A|U|1081
7RQD|1|2A|U|1082
7RQD|1|2A|U|1083
7RQD|1|2A|A|1084
7RQD|1|2A|A|1085
7RQD|1|2A|A|1086
7RQD|1|2A|G|1087
7RQD|1|2A|A|1088
7RQD|1|2A|G|1089
7RQD|1|2A|U|1090
7RQD|1|2A|G|1091
*
7RQD|1|2A|C|1100
7RQD|1|2A|U|1101
7RQD|1|2A|C|1102
7RQD|1|2A|A|1103
7RQD|1|2A|C|1104
7RQD|1|2A|U|1105
7RQD|1|2A|G|1106
7RQD|1|2A|G|1107
7RQD|1|2A|U|1108
7RQD|1|2A|C|1109
7RQD|1|2A|G|1110
7RQD|1|2A|A|1111
7RQD|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6