J3_7RQD_073

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

7RQD|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2a|U|672
7RQD|1|2a|G|673
7RQD|1|2a|G|674
7RQD|1|2a|A|675
7RQD|1|2a|A|676
7RQD|1|2a|U|677
*
7RQD|1|2a|G|713
7RQD|1|2a|G|714
7RQD|1|2a|A|715
7RQD|1|2a|A|716
7RQD|1|2a|C|717
7RQD|1|2a|G|718
7RQD|1|2a|C|719
7RQD|1|2a|C|720
7RQD|1|2a|G|721
7RQD|1|2a|A|722
7RQD|1|2a|U|723
7RQD|1|2a|G|724
7RQD|1|2a|G|725
*
7RQD|1|2a|C|732
7RQD|1|2a|A|733
7RQD|1|2a|G|734

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18