3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
7RR5|1|C2|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7RR5_043 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.1719
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7RR5|1|C2|U|633
7RR5|1|C2|G|634
7RR5|1|C2|A|635
*
7RR5|1|C2|U|861
7RR5|1|C2|A|862
7RR5|1|C2|A|863
7RR5|1|C2|U|864
7RR5|1|C2|A|865
7RR5|1|C2|G|866
*
7RR5|1|C2|C|962
7RR5|1|C2|A|963
7RR5|1|C2|U|964
7RR5|1|C2|U|965
7RR5|1|C2|A|966

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SH
40S ribosomal protein S7
Chain SL
40S ribosomal protein S11-B
Chain SN
40S ribosomal protein S13
Chain SW
RPS22A isoform 1
Chain SX
40S ribosomal protein S23
Chain Sb
40S ribosomal protein S27-A

Coloring options:


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