J3_7RYF_007

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYF_007 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1589

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7RYF|1|A|U|1339
7RYF|1|A|C|1340
7RYF|1|A|G|1341
7RYF|1|A|A|1342
7RYF|1|A|C|1343
7RYF|1|A|C|1344
*
7RYF|1|A|G|1377
7RYF|1|A|A|1378
7RYF|1|A|A|1379
7RYF|1|A|A|1380
*
7RYF|1|A|U|1397
7RYF|1|A|A|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23