J3_7RYF_028

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAAC*GAACGUAGAG*CGUAC

Length

20 nucleotides

Bulged bases

7RYF|1|A|U|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYF_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0891

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7RYF|1|A|G|299
7RYF|1|A|G|300
7RYF|1|A|A|301
7RYF|1|A|A|302
7RYF|1|A|C|303
*
7RYF|1|A|G|318
7RYF|1|A|A|319
7RYF|1|A|A|320
7RYF|1|A|C|321
7RYF|1|A|G|322
7RYF|1|A|U|323
7RYF|1|A|A|324
7RYF|1|A|G|325
7RYF|1|A|A|326
7RYF|1|A|G|327
*
7RYF|1|A|C|339
7RYF|1|A|G|340
7RYF|1|A|U|341
7RYF|1|A|A|342
7RYF|1|A|C|343

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24