J3_7RYG_003

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAUCUA*UAG*CAAG

Length

14 nucleotides

Bulged bases

7RYG|1|A|U|684, 7RYG|1|A|A|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0846

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7RYG|1|A|C|681
7RYG|1|A|G|682
7RYG|1|A|A|683
7RYG|1|A|U|684
7RYG|1|A|C|685
7RYG|1|A|U|686
7RYG|1|A|A|687
*
7RYG|1|A|U|771
7RYG|1|A|A|772
7RYG|1|A|G|773
*
7RYG|1|A|C|789
7RYG|1|A|A|790
7RYG|1|A|A|791
7RYG|1|A|G|792

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain C

50S ribosomal protein L2