J3_7RYG_005

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_005 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.2149

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7RYG|1|A|C|1293
7RYG|1|A|G|1294
7RYG|1|A|A|1295
7RYG|1|A|A|1296
7RYG|1|A|A|1297
7RYG|1|A|G|1298
*
7RYG|1|A|C|1623
7RYG|1|A|A|1624
7RYG|1|A|G|1625
*
7RYG|1|A|C|1637
7RYG|1|A|A|1638
7RYG|1|A|A|1639
7RYG|1|A|G|1640

Current chains

Chain A

23S ribosomal RNA

Nearby chains