J3_7RYG_010

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7RYG|1|A|A|2514, 7RYG|1|A|U|2515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1037

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7RYG|1|A|C|2513
7RYG|1|A|A|2514
7RYG|1|A|U|2515
7RYG|1|A|C|2516
*
7RYG|1|A|G|2541
7RYG|1|A|U|2542
7RYG|1|A|A|2543
*
7RYG|1|A|U|2557
7RYG|1|A|U|2558
7RYG|1|A|U|2559
7RYG|1|A|A|2560
7RYG|1|A|A|2561
7RYG|1|A|A|2562
7RYG|1|A|G|2563

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14