J3_7RYG_028

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAAC*GAACGUAGAG*CGUAC

Length

20 nucleotides

Bulged bases

7RYG|1|A|U|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0946

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7RYG|1|A|G|299
7RYG|1|A|G|300
7RYG|1|A|A|301
7RYG|1|A|A|302
7RYG|1|A|C|303
*
7RYG|1|A|G|318
7RYG|1|A|A|319
7RYG|1|A|A|320
7RYG|1|A|C|321
7RYG|1|A|G|322
7RYG|1|A|U|323
7RYG|1|A|A|324
7RYG|1|A|G|325
7RYG|1|A|A|326
7RYG|1|A|G|327
*
7RYG|1|A|C|339
7RYG|1|A|G|340
7RYG|1|A|U|341
7RYG|1|A|A|342
7RYG|1|A|C|343

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24